Overview¶
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NeuroFlow: A streamlined toolkit for DWI post-processing, offering advanced analysis and visualization for neuroimaging research.
Free software: MIT license
Documentation: https://neuroflow.readthedocs.io.
Features¶
Estimation of tensor derivatives (FA, MD, AD, RD, etc.) using either MRtrix3 or DIPY.
Registration of numerous volumetric parcellation atlases to subjects’ native T1w and DWI images.
Estimation of numerous distribution metrices (e.g. mean, median, IQR-mean, etc.) of diffusion metrics within each parcellation unit.
Automatic extraction of available covariates originating from different sources (demographics, temporal, environmental).
Quality control of the preprocessing of the diffusion MRI data.
Usage¶
Basic Usage¶
$ neuroflow process <input_dir> <output_dir> <google_credentials>
Credits¶
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.